Aquaculture Genome Technologies

Aquaculture Genome Technologies Aquaculture Genome Technologies Zhanjiang (John) Liu Auburn University Zhanjiang (John) Liuis a Distinguished Alumni Professor, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, and Director, Aquatic Genomics Unit at Auburn University. ©2007 Blackwell Publishing All rights reserved Blackwell Publishing Professional 2121 State Avenue, Ames, Iowa 50014, USA Orders: 1-800-862-6657 Office: Fax: 1-515-292-0140 1-515-292-3348 Web site: www.blackwellprofessional.com Blackwell Publishing Ltd 9600 Garsington Road, Oxford OX4 2DQ, UK Tel.: +44 (0)1865 776868 Blackwell Publishing Asia 550 Swanston Street, Carlton, Victoria 3053, Australia Tel.: +61 (0)3 8359 1011 Authorization to photocopy items for internal or personal use, or the internal or personal use of specific clients, is granted by Blackwell Publishing, provided that the base fee is paid directly to the Copyright Clearance Center, 222 Rosewood Drive, Danvers, MA 01923. For those organizations that have been granted a photocopy license by CCC, a separate system of pay-ments has been arranged. The fee codes for users of the Transactional Reporting Service is ISBN-13: 978-0-8138-0203-9/2007. First edition, 2007 Library of Congress Cataloging-in-Publication Data Liu, Zhanjiang. Aquaculture genome technologies / Zhanjiang (John) Liu. — 1st ed. p. cm. ISBN-13: 978-0-8138-0203-9 (alk. paper) ISBN-10: 0-8138-0203-2 (alk. paper) 1. Genomics. 2. Aquatic genetic resources. 3. Aquaculture. I. Title. QH447.L58 2007 572.86—dc22 2006038408 The last digit is the print number: 9 8 7 6 5 4 3 2 1 Contents Foreword ix James E. Womack Preface xi List of Contributors xiii Chapter 1. Concept of Genomes and Genomics 1 Zhanjiang Liu Part 1: Marking Genomes Chapter 2. Chapter 3. Chapter 4. Chapter 5. Chapter 6. Chapter 7. Chapter 8. Chapter 9. Restriction Fragment Length Polymorphism (RFLP) 11 Zhanjiang Liu Randomly Amplified Polymorphic DNA (RAPD) 21 Zhanjiang Liu Amplified Fragment Length Polymorphism (AFLP) 29 Zhanjiang Liu Microsatellite Markers and Assessment of Marker Utility 43 Zhanjiang Liu Single Nucleotide Polymorphism (SNP) 59 Zhanjiang Liu Allozyme and Mitochondrial DNA Markers 73 Huseyin Kucuktas and Zhanjiang Liu Individual-based Genotype Methods in Aquaculture 87 Pierre Duchesne and Louis Bernatchez Application of DNA Markers for Population Genetic Analysis 109 Eric M. Hallerman, Paul J. Grobler, and Jess W. Jones Part 2: Mapping Genomes Chapter 10. Linkage Mapping in Aquaculture Species 139 Roy G. Danzmann and Karim Gharbi Chapter 11. Detection and Analysis of Quantitative Trait Loci (QTL) for Economic Traits in Aquatic Species 169 Abraham Korol, Andrey Shirak, Avner Cnaani, and Eric M. Hallerman Chapter 12. Marker-Assisted Selection for Aquaculture Species 199 Max F. Rothschild and Anatoly Ruvinsky v ... - tailieumienphi.vn