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Mass Spectrometry and Related Techniques 1
Lecture Date: February 25th, 2008
Ion and Particle Spectrometry 1 - Outline
Atomic and Molecular Mass Spectrometry
– Skoog et al. Chapter 11 (atomic) and Chapter 20 (Molecular).
– Cazes Chapter 14
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Mass Spectrometry
Mass Spectrometry (a.k.a. MS or mass spec) – a method of separating and analyzing ions by their mass-to-charge ratio
MS does not involve a specific region of the electromagnetic spectrum (because it is not directly interested in the energies of emitted photons, electronic or vibrationaltransitions,nuclear spin transitions,etc…)
Ion abundance
Ion
Ion Ion
m/z Up to m/z= 100000!
General Notes on Atomic and Molecular Mass
Helpful units and conversions:
– 1 amu = 1 Da = 1/12 the mass of a neutral 12C atom.
– 1 kDa = 1000 amu
Atomic weights of other elements are defined by comparison.
Mass-to-charge ratio (m/z): the ratio of the mass of an ion (m) to its charge (z)
Molecular ion: an ion consisting of essentially the whole molecule
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Mass Spectrometers
Ablock diagram of a “generic” mass spectrometer:
Ionization Source
Mass Analyzer
Detector
Ionization Sources
Electron Ionization (EI)
Chemical Ionization (CI/APCI) Photo-ionization(APPI)
Electrospray (ESI)
Matrix-assisted Laser Desorption (MALDI) FieldDesorption (FD)
Plasma Desorption (PD)
Fast atom bombardment (FAB) High-temperature Plasma (ICP)
Gas Phase
Desorption
Ionization Source
Mass Analyzer
Detector
Seealso Table 20-1 in Skoog, et al.
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EI: Electron Ionization/Electron Impact
The electron ionization (EI) source is designed to produce gaseous ions for analysis.
Heated Incandescent Tungsten/Rhenium Filament
E-
EI, which was one of the earliestsources in wide use for MS, usually operates on vapors (such as those eluting from a GC)
Accel!
70 eV
Vaporized
Molecules Ions
To Mass
Analyzer
EI: Electron Ionization/Electron Impact How EI works:
– Electronsare emittedfrom a filamentmade of tungsten, rhenium, etc…
– They are accelerated by a potential of 70 V
– The electrons and moleculescross (usually at a right angle) and collide
– The ions are primarly singly-charged, positive ions, that are extractedby a small potential (5V) through a slit
See also Fig. 20-3, pg. 502 in Skoog, et al.
Diagram from F. W. McLafferty, “Interpretation of Mass Spectra”, 3rd Ed., University Science Books, Mill Valley, CA(1980).
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EI: Electron Ionization/Electron Impact
Whenelectrons hit – the molecules undergo rovibrationalexcitation (the mass of electrons is too small to really “move” the molecules)
About one in a million molecules undergo the reaction:
M+ e- M+ + 2e-
EI: Electron Ionization/Electron Impact
Advantages:
– Results in complexmass spectra with fragmentions, useful for structural identification
Disadvantages:
– Can produce too much fragmentation,leading to no molecular ions! (makes structural identificationdifficult!)
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